replace conda with condalog to get pass through behavior

condalog.sh

#! /bin/bash

LOGBOOK=bs-testing
pkg_list_base="/tmp/automated-list-of-conda-packages"

echo "pkg_list_base=$pkg_list_base"
#exit 1

echo "
    Capturing current list of conda packages in 
    
            [$CONDA_DEFAULT_ENV] 
    
    (if empty, you are in the root environment
"
conda list -e > $pkg_list_base-before.txt

conda $*

#source activate /tmp/foo
echo "
    Capturing current list of conda packages in 
    
            [$CONDA_DEFAULT_ENV] 
    
    (if empty, you are in the root environment
"
conda list -e > $pkg_list_base-after.txt

diff $pkg_list_base-before.txt $pkg_list_base-after.txt > $pkg_list_base-diff.txt

echo "
    Package diff:
"
cat $pkg_list_base-diff.txt

echo "
    Uploading to $LOGBOOK
"
python -c "from pyOlog.cli.ipy import olog; \
from pyOlog.OlogDataTypes import Attachment; \
import os; \
olog(msg='conda $*', \
     logbooks='$LOGBOOK', \
     attachments=[Attachment(open('$pkg_list_base-before.txt', 'r')), \
                  Attachment(open('$pkg_list_base-after.txt', 'r')), \
                  Attachment(open('$pkg_list_base-diff.txt', 'r'))])"