Created
January 27, 2025 12:08
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| { | |
| "$schema": "http://json-schema.org/draft-07/schema#", | |
| "type": "object", | |
| "properties": { | |
| "name": { | |
| "type": "string", | |
| "default": "Loculus", | |
| "description": "The name of the Loculus instance" | |
| }, | |
| "logo": { | |
| "type": "object", | |
| "properties": { | |
| "url": { | |
| "type": "string", | |
| "description": "URL path to the logo image file" | |
| }, | |
| "width": { | |
| "type": "integer", | |
| "default": 100, | |
| "description": "Width of the logo in pixels" | |
| }, | |
| "height": { | |
| "type": "integer", | |
| "default": 100, | |
| "description": "Height of the logo in pixels" | |
| } | |
| } | |
| }, | |
| "accessionPrefix": { | |
| "type": "string", | |
| "default": "LOC_", | |
| "description": "Prefix used for accession numbers" | |
| }, | |
| "environment": { | |
| "type": "string", | |
| "enum": ["local", "server"], | |
| "default": "server", | |
| "description": "Deployment environment. local for development, server for production" | |
| }, | |
| "host": { | |
| "type": "string", | |
| "description": "Hostname where Loculus will be accessible" | |
| }, | |
| "bannerMessage": { | |
| "type": "string", | |
| "description": "Banner message (as HTML) to display at the very top of the page" | |
| }, | |
| "welcomeMessageHTML": { | |
| "type": "string", | |
| "description": "A custom welcome message to be shown on the landing page" | |
| }, | |
| "additionalHeadHTML": { | |
| "type": "string", | |
| "description": "Additional HTML to inject into the <head> of pages" | |
| }, | |
| "createTestAccounts": { | |
| "type": "boolean", | |
| "description": "If true, creates the users testuser and superuser" | |
| }, | |
| "robotsNoindexHeader": { | |
| "type": "boolean", | |
| "description": "If true, adds a noindex header to prevent search engine indexing" | |
| }, | |
| "seqSets": { | |
| "type": "object", | |
| "properties": { | |
| "enabled": { | |
| "type": "boolean", | |
| "description": "Enable/disable SeqSets" | |
| }, | |
| "crossRef": { | |
| "type": ["object", "null"], | |
| "properties": { | |
| "DOIPrefix": { | |
| "type": "string" | |
| }, | |
| "endpoint": { | |
| "type": "string" | |
| }, | |
| "databaseName": { | |
| "type": "string" | |
| }, | |
| "email": { | |
| "type": "string", | |
| "format": "email" | |
| }, | |
| "organization": { | |
| "type": "string" | |
| }, | |
| "hostUrl": { | |
| "type": "string" | |
| } | |
| } | |
| } | |
| } | |
| }, | |
| "website": { | |
| "type": "object", | |
| "properties": { | |
| "websiteConfig": { | |
| "type": "object", | |
| "properties": { | |
| "enableLoginNavigationItem": { | |
| "type": "boolean", | |
| "default": true | |
| }, | |
| "enableSubmissionNavigationItem": { | |
| "type": "boolean", | |
| "default": true | |
| }, | |
| "enableSubmissionPages": { | |
| "type": "boolean", | |
| "default": true | |
| } | |
| } | |
| }, | |
| "runtimeConfig": { | |
| "type": "object", | |
| "properties": { | |
| "public": { | |
| "type": "object", | |
| "properties": { | |
| "backendUrl": { | |
| "type": "string" | |
| }, | |
| "keycloakUrl": { | |
| "type": "string" | |
| }, | |
| "lapisUrlTemplate": { | |
| "type": "string" | |
| } | |
| } | |
| } | |
| } | |
| } | |
| } | |
| }, | |
| "auth": { | |
| "type": "object", | |
| "properties": { | |
| "smtp": { | |
| "type": "object", | |
| "properties": { | |
| "host": { | |
| "type": "string" | |
| }, | |
| "port": { | |
| "type": "integer" | |
| }, | |
| "user": { | |
| "type": "string" | |
| }, | |
| "replyTo": { | |
| "type": "string", | |
| "format": "email" | |
| }, | |
| "from": { | |
| "type": "string", | |
| "format": "email" | |
| }, | |
| "envelopeFrom": { | |
| "type": "string", | |
| "format": "email" | |
| } | |
| } | |
| }, | |
| "verifyEmail": { | |
| "type": "boolean", | |
| "default": true | |
| }, | |
| "resetPasswordAllowed": { | |
| "type": "boolean", | |
| "default": true | |
| }, | |
| "registrationAllowed": { | |
| "type": "boolean", | |
| "default": true | |
| } | |
| } | |
| }, | |
| "organisms": { | |
| "type": "object", | |
| "patternProperties": { | |
| "^.*$": { | |
| "type": "object", | |
| "properties": { | |
| "schema": { | |
| "type": "object", | |
| "properties": { | |
| "organismName": { | |
| "type": "string" | |
| }, | |
| "image": { | |
| "type": "string" | |
| }, | |
| "loadSequencesAutomatically": { | |
| "type": "boolean", | |
| "default": true | |
| }, | |
| "metadata": { | |
| "type": "array", | |
| "items": { | |
| "type": "object", | |
| "properties": { | |
| "name": { | |
| "type": "string" | |
| }, | |
| "displayName": { | |
| "type": "string" | |
| }, | |
| "type": { | |
| "type": "string" | |
| }, | |
| "required": { | |
| "type": "boolean" | |
| }, | |
| "definition": { | |
| "type": "string" | |
| }, | |
| "guidance": { | |
| "type": "string" | |
| }, | |
| "generateIndex": { | |
| "type": "boolean" | |
| }, | |
| "autocomplete": { | |
| "type": "boolean" | |
| } | |
| }, | |
| "required": ["name", "displayName", "type"] | |
| } | |
| } | |
| }, | |
| "required": ["organismName"] | |
| }, | |
| "preprocessing": { | |
| "type": "array", | |
| "items": { | |
| "type": "object", | |
| "properties": { | |
| "version": { | |
| "type": "integer" | |
| }, | |
| "image": { | |
| "type": "string" | |
| }, | |
| "args": { | |
| "type": "array", | |
| "items": { | |
| "type": "string" | |
| } | |
| }, | |
| "configFile": { | |
| "type": "object" | |
| } | |
| }, | |
| "required": ["version", "image"] | |
| } | |
| }, | |
| "referenceGenomes": { | |
| "type": "object", | |
| "properties": { | |
| "nucleotideSequences": { | |
| "type": "array", | |
| "items": { | |
| "type": "object", | |
| "properties": { | |
| "name": { | |
| "type": "string" | |
| }, | |
| "sequence": { | |
| "type": "string" | |
| }, | |
| "insdcAccessionFull": { | |
| "type": "string" | |
| } | |
| }, | |
| "required": ["name", "sequence"] | |
| } | |
| }, | |
| "genes": { | |
| "type": "array", | |
| "items": { | |
| "type": "object", | |
| "properties": { | |
| "name": { | |
| "type": "string" | |
| }, | |
| "sequence": { | |
| "type": "string" | |
| } | |
| }, | |
| "required": ["name", "sequence"] | |
| } | |
| } | |
| } | |
| } | |
| }, | |
| "required": ["schema"] | |
| } | |
| } | |
| }, | |
| "lineageSystemDefinitions": { | |
| "type": "object", | |
| "patternProperties": { | |
| "^.*$": { | |
| "type": "object", | |
| "patternProperties": { | |
| "^[0-9]+$": { | |
| "type": "string", | |
| "format": "uri" | |
| } | |
| } | |
| } | |
| } | |
| } | |
| }, | |
| "required": ["name", "host"] | |
| } |
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