Andrew Trice tricead
tricead
/ TuiFilterer.py
Created
April 2, 2020 17:32
A script to filter the MRCONSO table in the UMLS metathesaurus by the TUI semantic value in the MRSTY table
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| import csv | |
| mrconso = open("/Path/MRCONSO.RRF", 'r') | |
| mrsty = open("/Path/MRSTY.RRF", 'r') | |
| cuituidict = {} | |
| for line in mrsty.readlines(): | |
| splitline = line.split("|") | |
| cui = splitline[0] | |
| tui = splitline[1] | |
| if(cuituidict.get(cui) == None): | |
| cuituidict[cui] = [tui] |