Tian Tian ttgump

Machine learning; Deep learning; Bioinformatics

ttgump / gtf2bed.py

Created March 22, 2016 06:25 — forked from davidliwei/gtf2bed.py

Converting Cufflinks predictions (.GTF) into .BED annotations

	#!/usr/bin/env python3
	'''
	gtf2bed.py converts GTF file to BED file.
	Usage: gtf2bed.py {OPTIONS} [.GTF file]

	History
	Nov.5th 2012:
	1. Allow conversion from general GTF files (instead of only Cufflinks supports).
	2. If multiple identical transcript_id exist, transcript_id will be appended a string like "_DUP#" to separate.
	'''