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bco.owl to look at OWL syntax rendering in gist
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gistfile1.owl
@prefix : <http://purl.obolibrary.org/obo/bco.owl#> .
@prefix dc: <http://purl.org/dc/elements/1.1/> .
@prefix obo: <http://purl.obolibrary.org/obo/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix xml: <http://www.w3.org/XML/1998/namespace> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@base <http://purl.obolibrary.org/obo/bco.owl> .
<http://purl.obolibrary.org/obo/bco.owl> rdf:type owl:Ontology ;
rdfs:label "The Biological Collections Ontology" ;
rdfs:comment """This is the editor's version of the ontology. Use with caution. For the live version of the ontology, use http://purl.obolibrary.org/obo/bco.owl.
The Biological Collections Ontology was originally created at the Biocode Commons Hackathon at GSC14. Older versions can be viewed at http://code.google.com/p/biocode-commons/source/browse/#svn%2Ftrunk%2Fontologies%2Fbiocollections. Some of the classes in this ontology may be replaced by existing or newly requested terms from OBI or other ontologies.
The Biological Collections Ontology (BCO) is licensed under a Creative Commons zero (CC0) license - http://creativecommons.org/publicdomain/zero/1.0/. You can copy, modify, distribute and perform the work, even for commercial purposes, all without asking permission. We ask that anyone using this ontology follow the standards of the scientific ontology community by re-using ontology identifiers whenever possible and properly citing the ontology and its creators."""^^xsd:string ;
dc:contributor "John Deck" ,
"Robert Guralnick" ,
"Barry Smith" ,
"Ramona Walls" ,
"Biocode Commons Ontology Hackathon members" ,
"John Wieczorek" ;
owl:imports <https://raw.githubusercontent.com/tucotuco/bco/master/src/ontology/dwcterms.owl> ,
<https://raw.githubusercontent.com/tucotuco/bco/master/src/ontology/iao_bco_imports.owl> ,
<https://raw.githubusercontent.com/tucotuco/bco/master/src/ontology/obi_bco_imports.owl> ,
<https://raw.githubusercontent.com/tucotuco/bco/master/src/ontology/ontology_metadata_bco_imports.owl> ,
<https://raw.githubusercontent.com/tucotuco/bco/master/src/ontology/ro_bco_imports.owl> .
#################################################################
#
# Annotation properties
#
#################################################################
### http://purl.obolibrary.org/obo/BCO_0000057
obo:BCO_0000057 rdf:type owl:AnnotationProperty ;
rdfs:label "taxonomic inventory metadata preferred name"@en ;
rdfs:subPropertyOf obo:IAO_0000118 .
### http://purl.obolibrary.org/obo/BCO_0000060
obo:BCO_0000060 rdf:type owl:AnnotationProperty ;
rdfs:label "BCO preferred label"@en .
### http://purl.obolibrary.org/obo/BCO_0000074
obo:BCO_0000074 rdf:type owl:AnnotationProperty ;
rdfs:label "dwc_bco mapping"@en .
### http://purl.obolibrary.org/obo/IAO_0000231
obo:IAO_0000231 rdf:type owl:AnnotationProperty .
### http://purl.obolibrary.org/obo/IAO_0000589
obo:IAO_0000589 rdf:type owl:AnnotationProperty .
### http://purl.obolibrary.org/obo/IAO_creation_date
obo:IAO_creation_date rdf:type owl:AnnotationProperty .
### http://purl.org/dc/elements/1.1/creator
dc:creator rdf:type owl:AnnotationProperty .
### http://purl.org/dc/elements/1.1/source
dc:source rdf:type owl:AnnotationProperty .
#################################################################
#
# Object Properties
#
#################################################################
### http://purl.obolibrary.org/obo/BCO_0000058
obo:BCO_0000058 rdf:type owl:ObjectProperty ;
rdfs:label "has role"@en ;
obo:IAO_0000115 "The relationship between an independent continuant and a role. Slightly more specific than the parent class bearer of." ;
rdfs:comment "This property was originally created in OBI, but in OBI it was deprecated and replaced by BFO:0000087. However, the BFO relation was replaced by has role at some time, which is not yet part of a stable release. Once the BFO role has been tested and released, it may replace this relation." ;
rdfs:domain obo:BFO_0000004 ;
rdfs:subPropertyOf obo:RO_0000053 .
### http://purl.obolibrary.org/obo/BCO_0000067
obo:BCO_0000067 rdf:type owl:ObjectProperty ,
owl:TransitiveProperty ;
rdfs:label "derives from by planned process"@en ;
rdfs:range obo:BFO_0000040 ;
rdfs:domain obo:BFO_0000040 ;
obo:IAO_0000114 obo:IAO_0000423 ;
rdfs:subPropertyOf owl:topObjectProperty ;
owl:propertyChainAxiom ( obo:OBI_0000312
obo:RO_0002233
) .
### http://purl.obolibrary.org/obo/BCO_0000068
obo:BCO_0000068 rdf:type owl:ObjectProperty ,
owl:TransitiveProperty ;
rdfs:label "is derived into by planned process"@en ;
owl:inverseOf obo:BCO_0000067 ;
obo:IAO_0000114 obo:IAO_0000423 ;
rdfs:subPropertyOf owl:topObjectProperty ;
owl:propertyChainAxiom ( obo:OBI_0000295
obo:RO_0002234
) .
### http://purl.obolibrary.org/obo/BFO_0000051
obo:BFO_0000051 rdf:type owl:ObjectProperty .
### http://purl.obolibrary.org/obo/OBI_0000293
obo:OBI_0000293 rdfs:subPropertyOf obo:RO_0002233 .
### http://purl.obolibrary.org/obo/OBI_0000295
obo:OBI_0000295 rdf:type owl:ObjectProperty ;
rdfs:label "is_specified_input_of" ;
rdfs:subPropertyOf obo:RO_0002352 .
### http://purl.obolibrary.org/obo/OBI_0000299
obo:OBI_0000299 rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf obo:RO_0002234 .
### http://purl.obolibrary.org/obo/OBI_0000312
obo:OBI_0000312 rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf obo:RO_0002353 .
### http://purl.obolibrary.org/obo/RO_0000053
obo:RO_0000053 rdf:type owl:ObjectProperty .
### http://purl.obolibrary.org/obo/RO_0002233
obo:RO_0002233 rdf:type owl:ObjectProperty .
### http://purl.obolibrary.org/obo/RO_0002234
obo:RO_0002234 rdf:type owl:ObjectProperty .
### http://purl.obolibrary.org/obo/RO_0002353
obo:RO_0002353 rdf:type owl:ObjectProperty .
#################################################################
#
# Classes
#
#################################################################
### http://purl.obolibrary.org/obo/BCO_0000047
obo:BCO_0000047 rdf:type owl:Class ;
rdfs:label "taxonomic inventory process"@en ;
owl:equivalentClass [ rdf:type owl:Class ;
owl:intersectionOf ( obo:OBI_0000011
[ rdf:type owl:Restriction ;
owl:onProperty obo:OBI_0000299 ;
owl:someValuesFrom obo:BCO_0000048
]
)
] ;
rdfs:subClassOf obo:OBI_0000011 ;
dc:source "https://docs.google.com/spreadsheet/ccc?key=0AhrY0qRdO4budC1mSUNWTDlkOXBVMjcza2Y3aV84SkE#gid=0" ;
rdfs:comment "not sure if this should be a type of assay or a type of planned process" ;
obo:IAO_0000115 "A planned process by which a taxonomic inventory is created."@en ;
dc:creator "Taxonomic Inventory Metadata Workshop" ;
obo:BCO_0000057 "inventory type"@en ;
obo:IAO_0000114 obo:IAO_0000124 .
### http://purl.obolibrary.org/obo/BCO_0000048
obo:BCO_0000048 rdf:type owl:Class ;
rdfs:label "taxonomic inventory"@en ;
owl:equivalentClass [ rdf:type owl:Class ;
owl:intersectionOf ( obo:IAO_0000030
[ rdf:type owl:Restriction ;
owl:onProperty obo:OBI_0000312 ;
owl:someValuesFrom obo:BCO_0000047
]
)
] ;
rdfs:subClassOf obo:IAO_0000030 ;
obo:IAO_0000112 "The butterflies of Great Britain" ;
obo:IAO_0000115 "An information content entity that is a list of taxa recorded in some geospatially defined area over some stated time period using some method involving some actor."@en ;
obo:IAO_0000112 "The plants of Yosemite National Park" ;
dc:creator "Taxonomic Inventory Metadata Workshop" ;
obo:IAO_0000112 "\"The Flora of North America\"" ;
dc:source "https://docs.google.com/spreadsheet/ccc?key=0AhrY0qRdO4budC1mSUNWTDlkOXBVMjcza2Y3aV84SkE#gid=0"@en ;
obo:IAO_0000114 obo:IAO_0000125 .
### http://purl.obolibrary.org/obo/BCO_0000051
obo:BCO_0000051 rdf:type owl:Class ;
rdfs:label "restricted search taxonomic inventory process"@en ;
rdfs:subClassOf obo:BCO_0000047 ;
obo:IAO_0000115 "A taxonomic inventory process that is restricted to defined plots, transects, or points, in which a person or group of people is comprehensively covering the entire defined area, usually with a defined survey time or pace. The search is restricted to a well-defined and human-scale geospatial area (traversable within a time course of less than a day) within which there is an expectation of a comprehensive accounting of the taxonomic items of interest. " ;
dc:creator "Taxonomic Inventory Metadata Workshop" ;
obo:IAO_0000112 "Pollard transect-- \"walk a 1km transect at a slow&steady pace, and report on all TOI within 5m in front, and 2.5m on either side of you.\"" ;
dc:source "https://docs.google.com/spreadsheet/ccc?key=0AhrY0qRdO4budC1mSUNWTDlkOXBVMjcza2Y3aV84SkE#gid=0"@en ;
obo:BCO_0000057 "restricted search"@en ;
obo:IAO_0000114 obo:IAO_0000124 .
### http://purl.obolibrary.org/obo/BCO_0000052
obo:BCO_0000052 rdf:type owl:Class ;
rdfs:label "open search taxonomic inventory process"@en ;
rdfs:subClassOf obo:BCO_0000047 ;
obo:IAO_0000115 "Search restricted within a larger defined geographic area, but where effort isn't even or complete across the defined region. That is, a planned search restricted to a larger, defined geographic area, but effort isn't evenly distributed throughout the area, nor expected to be a complete and comprehensive accounting of TOI's across the defined region. Temporal duration is typically longer than restricted search-- lasting hours to all day." ;
obo:IAO_0000112 "Individual Christmas Bird Count by some team. Organized field trip to a State Park." ;
dc:creator "Taxonomic Inventory Metadata Workshop" ;
dc:source "https://docs.google.com/spreadsheet/ccc?key=0AhrY0qRdO4budC1mSUNWTDlkOXBVMjcza2Y3aV84SkE#gid=0"@en ;
obo:BCO_0000057 "open search"@en ;
obo:IAO_0000114 obo:IAO_0000124 .
### http://purl.obolibrary.org/obo/BCO_0000053
obo:BCO_0000053 rdf:type owl:Class ;
rdfs:label "opportunistic search taxonomic inventory process"@en ;
rdfs:subClassOf obo:BCO_0000047 ;
obo:IAO_0000112 "Many E-Bird lists are of this nature; useful supplementary information is that observers should state whether they documented every taxon of interest they saw." ;
obo:IAO_0000115 "A taxonomic inventory process that is a more casual reporting of occurrences of taxa of interest, often intended to be comprehensive accounting of the taxa of interest, but with no planned trajectory for discovery, nor pre-specified investment of effort. " ;
dc:creator "Taxonomic Inventory Metadata Workshop" ;
rdfs:comment "This is more typically used to report multiple sightings, where the motivation is to record presence and abundance, rather than for individual anecdotal occurrences that are noteworthy."@en ;
dc:source "https://docs.google.com/spreadsheet/ccc?key=0AhrY0qRdO4budC1mSUNWTDlkOXBVMjcza2Y3aV84SkE#gid=0"@en ;
obo:BCO_0000057 "opportunistic search"@en ;
obo:IAO_0000114 obo:IAO_0000124 .
### http://purl.obolibrary.org/obo/BCO_0000054
obo:BCO_0000054 rdf:type owl:Class ;
rdfs:label "trap or sample taxonomic inventory process"@en ;
rdfs:subClassOf obo:BCO_0000047 ;
dc:creator "Taxonomic Inventory Metadata Workshop" ;
obo:IAO_0000115 "A taxonomic inventory process that is typically highly restricted in geospatial extent that involves either the physical extracton of some evidence of the presence of the taxa of interest, such as scat, fur, other material samples or information artifacts such as photographs or sound recordings."@en ;
rdfs:comment "Can be highly targeted and or baited (pheromone trap), or general (pitfall). Trap events can either be \"triggered\" but of long-term deployment, or rigorously temporally specified (left out overnight). "@en ;
obo:IAO_0000112 "an inventory of insects in a area using pheremone traps"@en ,
"an inventory of the large mammals of a park based on camera traps"@en ;
dc:source "https://docs.google.com/spreadsheet/ccc?key=0AhrY0qRdO4budC1mSUNWTDlkOXBVMjcza2Y3aV84SkE#gid=0"@en ;
obo:IAO_0000112 "inventories based on trawl samples"@en ;
obo:BCO_0000057 "trap/sample inventory"@en ;
obo:IAO_0000114 obo:IAO_0000124 .
### http://purl.obolibrary.org/obo/BCO_0000055
obo:BCO_0000055 rdf:type owl:Class ;
rdfs:label "adventitious taxonomic inventory process"@en ;
rdfs:subClassOf obo:BCO_0000047 ;
dc:creator "Taxonomic Inventory Metadata Workshop" ;
obo:IAO_0000115 "A taxonomic inventory in which taxon occurrences are recorde as a co-variates of another study and later compiled as a taxonomic inventory." ;
obo:BCO_0000057 "adventitious inventory"@en ;
obo:IAO_0000112 "data from ecological studies in which presence of some taxa is recorded to clarify population or community parameters" ;
dc:source "https://docs.google.com/spreadsheet/ccc?key=0AhrY0qRdO4budC1mSUNWTDlkOXBVMjcza2Y3aV84SkE#gid=0"@en ;
obo:IAO_0000114 obo:IAO_0000124 .
### http://purl.obolibrary.org/obo/BCO_0000056
obo:BCO_0000056 rdf:type owl:Class ;
rdfs:label "compilation taxonomic inventory process"@en ;
rdfs:subClassOf obo:BCO_0000047 ;
rdfs:comment "A compiliation taxonomic inventory process is typically required to document the occurences of taxa of interest over large geospatial areas, or to derive the most comprehensive accounting of presence and absence of taxa of interest in a larger region."@en ;
dc:creator "Taxonomic Inventory Metadata Workshop" ;
obo:IAO_0000112 "Atlases and Checklists" ;
obo:IAO_0000115 "A taxonomic inventory process in which a list of taxa of interes is assembled from various combinations of existing taxonomic inventories, rather than generated de novo from observations or samples."@en ;
obo:BCO_0000057 "compilation inventory"@en ;
dc:source "https://docs.google.com/spreadsheet/ccc?key=0AhrY0qRdO4budC1mSUNWTDlkOXBVMjcza2Y3aV84SkE#gid=0"@en ;
obo:IAO_0000114 obo:IAO_0000124 .
### http://purl.obolibrary.org/obo/BCO_0000059
obo:BCO_0000059 rdf:type owl:Class ;
rdfs:label "museum"@en ;
rdfs:subClassOf obo:OBI_0000245 ,
[ rdf:type owl:Restriction ;
owl:onProperty obo:BFO_0000051 ;
owl:someValuesFrom obo:bco_0000031
] ;
obo:IAO_0000119 "ISBN:9780759105096" ;
obo:IAO_0000115 "An institution that cares for (conserves) a collection of artifacts and other objects of scientific, artistic, cultural, or historical importance and makes them available for public viewing through exhibits that may be permanent or temporary." ;
obo:IAO_0000112 "The Louvre Museum"@en ,
"The Smithsonian Institution"@en ;
rdfs:comment "The class museum has meaning that is much broader than biological collecitons. It would probably be better to import this term from another, more general ontology and create a specific subclass for natural history museum."@en ;
obo:IAO_0000114 obo:IAO_0000124 .
### http://purl.obolibrary.org/obo/BCO_0000061
obo:BCO_0000061 rdf:type owl:Class ;
rdfs:label "fossil specimen"@en ;
rdfs:subClassOf <http://www.geneontology.org/formats/oboInOwl#ObsoleteClass> ;
owl:deprecated "true"^^xsd:boolean ;
obo:IAO_0000115 "A specimen that is derived from a fossil."@en ;
obo:IAO_0000112 "a fossil housed in a natural history museum"@en ;
obo:IAO_0000231 obo:IAO_0000103 .
### http://purl.obolibrary.org/obo/BCO_0000062
obo:BCO_0000062 rdf:type owl:Class ;
rdfs:label "living specimen"@en ;
rdfs:subClassOf <http://www.geneontology.org/formats/oboInOwl#ObsoleteClass> ;
owl:deprecated "true"^^xsd:boolean ;
obo:IAO_0000115 "A specimen that is alive."@en ;
obo:IAO_0000112 "a bacterial culture in a culture collection"@en ,
"a tree in an arboretum"@en ,
"an animal in a zoo"@en ,
"germplasm"@en ;
obo:IAO_0000231 obo:IAO_0000103 .
### http://purl.obolibrary.org/obo/BCO_0000063
obo:BCO_0000063 rdf:type owl:Class ;
rdfs:label "preserved specimen"@en ;
rdfs:subClassOf <http://www.geneontology.org/formats/oboInOwl#ObsoleteClass> ;
owl:deprecated "true"^^xsd:boolean ;
obo:IAO_0000115 "A specimen that has been preserved."@en ;
obo:IAO_0000231 obo:IAO_0000103 .
### http://purl.obolibrary.org/obo/BCO_0000064
obo:BCO_0000064 rdf:type owl:Class ;
rdfs:subClassOf obo:BFO_0000001 .
### http://purl.obolibrary.org/obo/BCO_0000065
obo:BCO_0000065 rdf:type owl:Class ;
rdfs:label "human observation process"@en ;
rdfs:subClassOf obo:bco_0000003 ;
obo:IAO_0000115 "An observing process in which the observing entity consists of one or more humans."@en ;
rdfs:comment "May be able to use the has agent = has active participant relationship for defining this. May want to work with OBI to define this term in a more general sense for investigations."@en ;
obo:IAO_0000112 "a biologist recording an observation of an animal in a field notebook"@en ,
"an entomologist recording the presense of butterflies while walking a transect"@en ;
obo:IAO_0000114 obo:IAO_0000123 .
### http://purl.obolibrary.org/obo/BCO_0000066
obo:BCO_0000066 rdf:type owl:Class ;
rdfs:label "machine observation process"@en ;
rdfs:subClassOf obo:bco_0000003 ;
obo:IAO_0000115 "An observing process in which the observing entity consists of one or more machines."@en ;
rdfs:comment "May want to work with OBI to define this term in a more general sense for investigations."@en ;
obo:IAO_0000112 "a camera trap recording the presence of a jaguar"@en ,
"a sensor periodically recording the surface temperature of a leaf over several hours"@en ;
obo:IAO_0000114 obo:IAO_0000123 .
### http://purl.obolibrary.org/obo/BFO_0000027
obo:BFO_0000027 rdf:type owl:Class ;
rdfs:label "object aggregate"@en ;
rdfs:subClassOf obo:BFO_0000040 .
### http://purl.obolibrary.org/obo/BFO_0000029
obo:BFO_0000029 owl:equivalentClass <http://rs.tdwg.org/dwc/dwctype/Location> .
### http://purl.obolibrary.org/obo/BFO_0000030
obo:BFO_0000030 rdf:type owl:Class ;
rdfs:label "object"@en ;
rdfs:subClassOf obo:BFO_0000040 .
### http://purl.obolibrary.org/obo/CARO_0001010
obo:CARO_0001010 rdf:type owl:Class ;
rdfs:label "organism or virus or viroid"^^xsd:string ;
rdfs:subClassOf obo:BFO_0000030 ;
obo:IAO_creation_date "9/18/11"^^xsd:string ;
obo:IAO_0000115 "Material anatomical entity that is a member of an individual species or is a viral or viroid particle."^^xsd:string ;
obo:IAO_0000117 "Melissa Haendel"^^xsd:string ;
obo:IAO_0000412 "Common Anatomy Reference Onotology - CARO2"@en ;
obo:IAO_0000589 "organism or virus"@en .
### http://purl.obolibrary.org/obo/OBI_0000011
obo:OBI_0000011 rdf:type owl:Class ;
rdfs:subClassOf obo:BFO_0000015 .
### http://purl.obolibrary.org/obo/OBI_0000245
obo:OBI_0000245 rdf:type owl:Class .
### http://purl.obolibrary.org/obo/OBI_0000659
obo:OBI_0000659 rdf:type owl:Class ;
obo:BCO_0000060 "specimen collection process" .
### http://purl.obolibrary.org/obo/OBI_0100051
obo:OBI_0100051 owl:equivalentClass <http://rs.tdwg.org/dwc/dwctype/MaterialSample> ;
obo:IAO_0000112 "A herbarium or museum specimen."^^xsd:string ,
"A jar of water, the microbes that were filtered from that water, the DNA extracted from those microbes, a subsample of that DNA."^^xsd:string .
### http://purl.obolibrary.org/obo/bco_0000000
obo:bco_0000000 rdf:type owl:Class ;
rdfs:label "evidence role"@en ;
rdfs:subClassOf obo:BFO_0000023 ;
rdfs:comment "It might be better to request this term in OBI or IAO." ;
obo:IAO_0000112 "A museum specimen that serves as evidence for a taxonomic identification process bears an evidence role." ;
obo:IAO_0000115 "A role that is borne by some entity as a result of the entity providing evidence to support an assertion." ;
obo:IAO_0000114 obo:IAO_0000124 .
### http://purl.obolibrary.org/obo/bco_0000001
obo:bco_0000001 rdf:type owl:Class ;
rdfs:label "persistent evidence role"@en ;
rdfs:subClassOf <http://www.geneontology.org/formats/oboInOwl#ObsoleteClass> ;
owl:deprecated "true"^^xsd:boolean ;
obo:IAO_0000115 "An evidence role that persists through time." ;
rdfs:comment """Could add relation that persistant evidence role is specifically dependent on a museum material samples.
Deprecated because we do not need this term. Can use OBI:evidence role. Not clear what it means for an evidence role to persist through time."""@en .
### http://purl.obolibrary.org/obo/bco_0000002
obo:bco_0000002 rdf:type owl:Class ;
rdfs:label "collecting process"@en ;
rdfs:subClassOf <http://www.geneontology.org/formats/oboInOwl#ObsoleteClass> ;
owl:deprecated "true"^^xsd:boolean ;
rdfs:comment "This term is now redundant and is merged with material sampling process http://purl.obolibrary.org/obo/bco_0000022." ;
obo:IAO_0000231 obo:IAO_0000227 .
### http://purl.obolibrary.org/obo/bco_0000003
obo:bco_0000003 rdf:type owl:Class ;
rdfs:label "observing process"@en ;
rdfs:subClassOf obo:BFO_0000015 ,
[ rdf:type owl:Restriction ;
owl:onProperty obo:BFO_0000117 ;
owl:someValuesFrom obo:bco_0000007
] ,
[ rdf:type owl:Restriction ;
owl:onProperty obo:RO_0002233 ;
owl:someValuesFrom obo:bco_0000044
] ,
[ rdf:type owl:Restriction ;
owl:onProperty obo:RO_0002234 ;
owl:someValuesFrom <http://rs.tdwg.org/dwc/dwctype/HumanObservation>
] ;
obo:IAO_0000115 "A process in which a person or machine sees or detects a material entity and selects it as worthy of observation, and which has as output an information content entity about the selected material entity." ;
dc:creator "Biocode Commons Ontology Hackathon" ;
obo:IAO_0000112 "Seeing three pelicans flying overhead on Christmas day." ,
"Observing butterflies during a transect walk." ,
"A trip camera capture of an image of a jaguar is an observation, because it is \"selected\" by the camera as worthy of obsevation simply by virtue of moving in front of the camera." ;
rdfs:comment "The information artifact may written or recorded or just be stored in someone's head (specifically depenedent upon that person). In the context of a taxonomic inventory, an observing process may be called a sighting, and is an ad hoc reporting of, typically, a single taxon occurrence, usually motivated by rarity, individual interest in the taxon, or atypicality of circumstances."@en ;
obo:BCO_0000057 "sighting"@en ;
obo:IAO_0000114 obo:IAO_0000125 .
### http://purl.obolibrary.org/obo/bco_0000004
obo:bco_0000004 rdf:type owl:Class ;
rdfs:label "being there process"@en ;
rdfs:subClassOf <http://www.geneontology.org/formats/oboInOwl#ObsoleteClass> ;
owl:deprecated "true"^^xsd:boolean ;
rdfs:comment "This term was originally developed at the Semantics of Biodiversity workshop in 5/2012. It is no longer needed for the BCO." ;
obo:IAO_0000115 "A process of existing in a particular spatio-temporal region."@en ;
obo:IAO_0000231 obo:IAO_0000103 .
### http://purl.obolibrary.org/obo/bco_0000005
obo:bco_0000005 rdf:type owl:Class ;
rdfs:label "printed report"@en ;
rdfs:subClassOf obo:BFO_0000030 ;
rdfs:comment "IAO has the term document, which is defined as \"A collection of information content entities intended to be understood together as a whole\" and has as examples journal article, patent application, laboratory notebook, and book. IAO also has a term for report, but it is not defined. With this term, we want to describe the physical object that corresponds to some information content entity, together with the information content contained in the document or report. This class may be less important for modeling collection data, but could be important for efforts to get hand written (specifically dependent) reports into an electronic (generically dependent) report, and monitoring that process." ;
dc:creator "Biocode Commons Ontology Hackathon" ;
obo:IAO_0000112 "a book"@en ,
"a field notebook"@en ;
obo:IAO_0000114 obo:IAO_0000124 .
### http://purl.obolibrary.org/obo/bco_0000006
obo:bco_0000006 rdf:type owl:Class ;
rdfs:label "printed observational report"@en ;
owl:equivalentClass [ rdf:type owl:Class ;
owl:intersectionOf ( obo:bco_0000005
[ rdf:type owl:Restriction ;
owl:onProperty obo:RO_0002353 ;
owl:someValuesFrom obo:bco_0000003
]
)
] ;
rdfs:subClassOf obo:bco_0000005 ;
obo:IAO_0000112 "A field notebook." ;
obo:IAO_0000115 "A printed report that records the outcome of some observing process."@en ;
dc:creator "Biocode Commons Ontology Hackathon" ;
obo:IAO_0000114 obo:IAO_0000124 .
### http://purl.obolibrary.org/obo/bco_0000007
obo:bco_0000007 rdf:type owl:Class ;
rdfs:label "selecting process"@en ;
rdfs:subClassOf obo:BFO_0000015 ,
[ rdf:type owl:Restriction ;
owl:onProperty obo:RO_0002233 ;
owl:someValuesFrom obo:BFO_0000040
] ;
obo:IAO_0000115 "A process by which a person or machine decides that a particular material entity as worthy of collection or observation." ;
dc:creator "Biocode Commons Ontology Hackathon" ;
obo:IAO_0000112 "Filtering sea water to extract only organisms smaller than a certain size."@en ;
rdfs:comment "The criteria for selection may be specified in a protocol or may be ad hoc. Should be replaced by OBI:selection, but first OBI needs to fix the definition."@en ;
obo:IAO_0000112 "deciding which branch to collect for a herbarium specimen"@en ;
obo:IAO_0000114 obo:IAO_0000423 .
### http://purl.obolibrary.org/obo/bco_0000016
obo:bco_0000016 rdf:type owl:Class ;
rdfs:label "submitting process"@en ;
rdfs:subClassOf obo:OBI_0000011 ,
[ rdf:type owl:Restriction ;
owl:onProperty obo:RO_0002233 ;
owl:someValuesFrom obo:BFO_0000040
] ;
dc:creator "Biocode Commons Ontology Hackathon" ;
obo:IAO_0000115 "A planned process whereby a person submits a material sample to an organization." ;
obo:IAO_0000112 "a curator submitting a herbarium speciman to a museum"@en ,
"a researcher submitting a water sample to a laboratory storage collection"@en ;
obo:IAO_0000114 obo:IAO_0000428 .
### http://purl.obolibrary.org/obo/bco_0000021
obo:bco_0000021 rdf:type owl:Class ;
rdfs:label "physical extraction process"@en ;
rdfs:subClassOf obo:BFO_0000015 ,
[ rdf:type owl:Restriction ;
owl:onProperty obo:RO_0002233 ;
owl:someValuesFrom obo:BFO_0000040
] ;
rdfs:comment "Considered acquisition in OBI, but that is about taking possession. Physical extraction may involve taking pocession, but it may also just involve extraction of something that is already posessed (e.g. of dna from cells). " ;
obo:IAO_0000112 "removing a fish from the ocean with a net" ,
"picking leaves from a plant" ;
obo:IAO_0000115 "A process that involves removing a material entity from its original site to another site." ;
obo:IAO_0000112 "removing dna from cells" ;
dc:creator "Biocode Commons Ontology Hackathon" ;
obo:IAO_0000114 obo:IAO_0000428 .
### http://purl.obolibrary.org/obo/bco_0000022
obo:bco_0000022 rdf:type owl:Class ;
rdfs:label "material sampling process"@en ;
rdfs:subClassOf <http://www.geneontology.org/formats/oboInOwl#ObsoleteClass> ;
rdfs:comment "This term has been replaced by OBI:specimen collection."^^xsd:string ;
owl:deprecated "true"^^xsd:boolean ;
dc:creator "Biocode Commons Ontology Hackathon" ;
obo:IAO_0000115 "A planned process that includes selecting a material entity for study, physically extracting the material entity, and submitting the material entity to some institution for preservation or study."@en ;
obo:IAO_0000118 "collecting event"@en ;
obo:IAO_0000112 "collecting plant parts for herbarium specimens"@en ,
"collecting sea water samples as part of Ocean Sampling Day"@en ;
obo:IAO_0000231 obo:IAO_0000103 .
### http://purl.obolibrary.org/obo/bco_0000023
obo:bco_0000023 rdf:type owl:Class ;
rdfs:label "data sampling process"@en ;
rdfs:subClassOf <http://www.geneontology.org/formats/oboInOwl#ObsoleteClass> ;
owl:deprecated "true"^^xsd:boolean ;
rdfs:comment "This term has been deprecated until it is determined whether or not it is needed in the BCO. Should probably be replaced by a term from OBI or IAO." ;
obo:IAO_0000231 obo:IAO_0000103 .
### http://purl.obolibrary.org/obo/bco_0000024
obo:bco_0000024 rdf:type owl:Class ;
rdfs:label "statistical sampling process"@en ;
rdfs:subClassOf <http://www.geneontology.org/formats/oboInOwl#ObsoleteClass> ;
owl:deprecated "true"^^xsd:boolean ;
rdfs:comment "This term has been deprecated until it is determined whether or not it is needed in the BCO. Should probably be replaced by a term from OBI or IAO." ;
obo:IAO_0000231 obo:IAO_0000103 .
### http://purl.obolibrary.org/obo/bco_0000025
obo:bco_0000025 rdf:type owl:Class ;
rdfs:label "locality description"@en ;
rdfs:subClassOf obo:IAO_0000030 ;
dc:creator "Biocode Commons Ontology Hackathon" ;
obo:IAO_0000115 "An information artifact that is about a spatio-temporal region at which a process (such as collecting process, observing process, or material sampling process) occured."@en ;
rdfs:comment "Darwin Core needs to describe both the site and time where some activity occurred as an information content entity (e.g., in recording data from a lab notebook),therefore, we made locality description about a spatial temporal region, rather than a site."@en ;
obo:IAO_0000114 obo:IAO_0000428 .
### http://purl.obolibrary.org/obo/bco_0000026
obo:bco_0000026 rdf:type owl:Class ;
rdfs:label "material sample role"@en ;
rdfs:subClassOf <http://www.geneontology.org/formats/oboInOwl#ObsoleteClass> ;
rdfs:comment "This term has been replaced by OBI:specimen role."^^xsd:string ;
owl:deprecated "true"^^xsd:boolean ;
dc:creator "Biocode Commons Ontology Hackathon" ;
obo:IAO_0000115 "A role that is borne by some material entity and is realized by the material entity being the output of a material sampling process."@en ;
obo:IAO_0000112 "the role borne by a branch when it becomes a herbarium specimen" ;
obo:IAO_0000231 obo:IAO_0000103 .
### http://purl.obolibrary.org/obo/bco_0000027
obo:bco_0000027 rdf:type owl:Class ;
rdfs:label "successful material sampling process"@en ;
rdfs:subClassOf <http://www.geneontology.org/formats/oboInOwl#ObsoleteClass> ;
owl:deprecated "true"^^xsd:boolean ;
obo:IAO_0000115 "A sampling process that has as output some material sample."@en ;
rdfs:comment "Do not need this class. By virtue of the existance of the material sample, we know that the sampling process was successful."@en ;
obo:IAO_0000231 obo:IAO_0000103 .
### http://purl.obolibrary.org/obo/bco_0000028
obo:bco_0000028 rdf:type owl:Class ;
rdfs:label "unsuccessful material sampling process"@en ;
rdfs:subClassOf <http://www.geneontology.org/formats/oboInOwl#ObsoleteClass> ;
owl:deprecated "true"^^xsd:boolean ;
obo:IAO_0000115 "A material sampling process that has as output exactly zero material samples."@en ;
rdfs:comment "Do not need this class. By virtue of the absence of the material sample, we know that the sampling process was unsuccessful." ;
obo:IAO_0000231 obo:IAO_0000103 .
### http://purl.obolibrary.org/obo/bco_0000029
obo:bco_0000029 rdf:type owl:Class ;
rdfs:label "museum collection entity"@en ;
rdfs:subClassOf <http://www.geneontology.org/formats/oboInOwl#ObsoleteClass> ;
owl:deprecated "true"^^xsd:boolean ;
rdfs:comment "At the GSC14 hackathon in 09/2012, we decided to deprecate this term." ;
obo:IAO_0000231 obo:IAO_0000103 .
### http://purl.obolibrary.org/obo/bco_0000030
obo:bco_0000030 rdf:type owl:Class ;
rdfs:label "organismal museum collection entity"@en ;
rdfs:subClassOf obo:bco_0000029 ;
owl:deprecated "true"^^xsd:boolean ;
obo:IAO_0000115 "A museum collections entity that derives from an organismal entity, has a persistent evidence role and 'depends on' a process of collecting."@en ;
rdfs:comment """The label for this on the original diagram was 'collection object'. However, not all entities in collections will fit the defition of 'object', so 'collection entity is probably a better name.
The relation 'depends on' cannot really be used here. Old BFO has 'inverse depends on', but this is not in the current BFO. See dwc_bfo2_new.owl for the original logical definition.
At the GSC14 hackathon in 09/2012, we decided to deprecate this term."""@en ;
obo:IAO_0000231 obo:IAO_0000103 .
### http://purl.obolibrary.org/obo/bco_0000031
obo:bco_0000031 rdf:type owl:Class ;
rdfs:label "museum collection"@en ;
rdfs:subClassOf obo:BFO_0000027 ,
[ rdf:type owl:Restriction ;
owl:onProperty obo:BFO_0000051 ;
owl:someValuesFrom obo:OBI_0100051
] ;
dc:creator "Biocode Commons Ontology Hackathon" ;
obo:IAO_0000115 "An object aggregate that has as member part a material sample that is located in museum as a result of a process of curation."@en ;
rdfs:comment "Intent is to document biodiversity for research and education. The class museum collection has meaning that is much broader than biological collections. It would probably be better to import this term from another, more general ontology and create a specific subclass for natural history museum collection."@en ;
obo:IAO_0000112 "The herbarium collection at the New York Botanical Garden." ,
"the painting collection at the Louvre Museum"@en ;
obo:IAO_0000114 obo:IAO_0000428 .
### http://purl.obolibrary.org/obo/bco_0000032
obo:bco_0000032 rdf:type owl:Class ;
rdfs:label "organismal museum collection"@en ;
rdfs:subClassOf obo:bco_0000031 ;
obo:IAO_0000115 "A museum collection that has as member part a material sample that was derived from an organism."@en ;
dc:creator "Biocode Commons Ontology Hackathon" ;
obo:IAO_0000112 "the insect collection at the Smithsonian Institution"@en ;
obo:IAO_0000114 obo:IAO_0000428 .
### http://purl.obolibrary.org/obo/bco_0000033
obo:bco_0000033 rdf:type owl:Class ;
rdfs:label "institution"@en ;
rdfs:subClassOf <http://www.geneontology.org/formats/oboInOwl#ObsoleteClass> ;
owl:deprecated "true"^^xsd:boolean ;
rdfs:comment "Replaced by OBI organization. Request institution as synonym in OBI." ;
obo:IAO_0000231 obo:IAO_0000423 .
### http://purl.obolibrary.org/obo/bco_0000034
obo:bco_0000034 rdf:type owl:Class ;
rdfs:label "organismal entity"@en ;
rdfs:subClassOf <http://www.geneontology.org/formats/oboInOwl#ObsoleteClass> ;
owl:deprecated "true"^^xsd:boolean ;
obo:IAO_0000115 "A material entity that derives from an organism or virus or viroid."@en ;
rdfs:comment """This class is understood to mean: A material entity that is either an organism, a part of an organism, a collection of organisms, or a fossil.
The relation 'organismal entity derives from organism' was in the original diagram. Subclasses of organismal entity include organism, and It is not clear if it is valid to that an organism derives from an organism (is the derives from relation reflexive?).
At the GSC14 hackathon in 09/2012, we decided to deprecate this term."""@en .
### http://purl.obolibrary.org/obo/bco_0000035
obo:bco_0000035 rdf:type owl:Class ;
rdfs:label "obsolete organism or virus or viroid"@en ;
rdfs:subClassOf <http://www.geneontology.org/formats/oboInOwl#ObsoleteClass> ;
owl:deprecated "true"^^xsd:boolean ;
rdfs:comment """This terms was replaced by a term imported from CARO.
The original diagram only had organsim, but DWC and GOs both need to include viruses and viroids."""@en ;
obo:IAO_0000231 obo:IAO_0000423 .
### http://purl.obolibrary.org/obo/bco_0000036
obo:bco_0000036 rdf:type owl:Class ;
rdfs:label "material sample"@en ;
rdfs:subClassOf <http://www.geneontology.org/formats/oboInOwl#ObsoleteClass> ;
rdfs:comment "This term has been replaced by OBI:specimen."^^xsd:string ;
owl:deprecated "true"^^xsd:boolean ;
obo:IAO_0000112 "A herbarium or museum specimen." ;
dc:creator "Biocode Commons Ontology Hackathon" ;
obo:IAO_0000112 """A jar of water, the microbes that were filtered from that water, the DNA extracted from those microbes, a subsample of that DNA.
""" ;
obo:IAO_0000115 "A material entity that has a material sample role. A material entity takes on the material sample role by being the output of a material samping process. That is, is selected for study, collected, and submitted to an institution for preservation or study."@en ;
obo:IAO_0000231 obo:IAO_0000103 .
### http://purl.obolibrary.org/obo/bco_0000037
obo:bco_0000037 rdf:type owl:Class ;
rdfs:label "data sample"@en ;
rdfs:subClassOf <http://www.geneontology.org/formats/oboInOwl#ObsoleteClass> ;
owl:deprecated "true"^^xsd:boolean ;
obo:IAO_0000115 "An information content entity (?) that is the result of some data sampling process."@en ;
rdfs:comment "This term has been deprecated until it is determined whether or not it is needed in the BCO. Should probably be replaced by a term from OBI or IAO." ;
obo:IAO_0000231 obo:IAO_0000103 .
### http://purl.obolibrary.org/obo/bco_0000038
obo:bco_0000038 rdf:type owl:Class ;
rdfs:label "statistical sample"@en ;
rdfs:subClassOf <http://www.geneontology.org/formats/oboInOwl#ObsoleteClass> ;
owl:deprecated "true"^^xsd:boolean ;
rdfs:comment "This term has been deprecated until it is determined whether or not it is needed in the BCO. Should probably be replaced by a term from OBI or IAO." ;
obo:IAO_0000231 obo:IAO_0000103 .
### http://purl.obolibrary.org/obo/bco_0000039
obo:bco_0000039 rdf:type owl:Class ;
rdfs:label "protocol governed sampling activity"@en ;
rdfs:subClassOf <http://www.geneontology.org/formats/oboInOwl#ObsoleteClass> ;
owl:deprecated "true"^^xsd:boolean ;
rdfs:comment "If sampling is a OBI planned process, that captures that it is protocal governed." ;
obo:IAO_0000231 obo:IAO_0000103 .
### http://purl.obolibrary.org/obo/bco_0000042
obo:bco_0000042 rdf:type owl:Class ;
rdfs:label "taxonomic identification process"@en ;
rdfs:subClassOf obo:OBI_0000011 ;
obo:IAO_0000112 "Using BLAST to identify the taxa present in an environmental (metagenomic) sample." ,
"Associating a museum specimen with a specific taxonomic concept based on its characters." ,
"Using a key to identify a plant in the field." ,
"Using DNA barcoding to identify a plant species." ;
dc:creator "Biocode Commons Ontology Hackathon" ;
obo:IAO_0000115 "A process by which a material sample is associated with a taxon or taxa." ;
obo:IAO_0000114 obo:IAO_0000125 .
### http://purl.obolibrary.org/obo/bco_0000043
obo:bco_0000043 rdf:type owl:Class ;
rdfs:label "process that yields a material representation of a material entity"@en ;
rdfs:subClassOf obo:BFO_0000015 ;
dc:creator "Biocode Commons Ontology Hackathon" ;
obo:IAO_0000232 "Consider term from OBI or IAO."@en ;
rdfs:comment """Includes as output rubbings, casts, photographic prints, audio or video tapes.
Needs a better name. Current name is the definition."""@en ;
obo:IAO_0000114 obo:IAO_0000423 .
### http://purl.obolibrary.org/obo/bco_0000044
obo:bco_0000044 rdf:type owl:Class ;
rdfs:label "material target of observation"@en ;
owl:equivalentClass [ rdf:type owl:Class ;
owl:intersectionOf ( obo:BFO_0000040
[ rdf:type owl:Restriction ;
owl:onProperty obo:BCO_0000058 ;
owl:someValuesFrom obo:bco_0000046
]
)
] ;
obo:IAO_0000115 "A material entity that has a target of observation role, that is, a material entity that is the input of some observing process."@en ;
dc:creator "Biocode Commons Ontology Hackathon" ;
obo:IAO_0000112 "A bird observed during a Christmas Bird Count"@en ,
"A bird observed during a transect walk." ,
"An lizard observed in the field that is not collected but whose location is recorded in a field notebook. " ,
"A tree is forest plot that is measured for diameter at breast height (DBH)." ;
obo:IAO_0000114 obo:IAO_0000428 .
### http://purl.obolibrary.org/obo/bco_0000045
obo:bco_0000045 rdf:type owl:Class ;
rdfs:label "process that yields an information artifact that is a representation of a material entity"@en ;
rdfs:subClassOf obo:BFO_0000015 ;
dc:creator "Biocode Commons Ontology Hackathon" ;
rdfs:comment """Includes audio recordings and photographs (which are information artifacts).
Needs a better name. Current name is the definition.""" ;
obo:IAO_0000232 "Some instances of term could possibly be replaced by OBI:image acquisition. Maybe request another OBI term for audio recording acquisition."@en ;
obo:IAO_0000114 obo:IAO_0000423 .
### http://purl.obolibrary.org/obo/bco_0000046
obo:bco_0000046 rdf:type owl:Class ;
rdfs:label "material target of observation role"@en ;
owl:equivalentClass [ rdf:type owl:Class ;
owl:intersectionOf ( obo:BFO_0000023
[ rdf:type owl:Restriction ;
owl:onProperty obo:BFO_0000054 ;
owl:someValuesFrom obo:bco_0000003
]
)
] ;
rdfs:subClassOf obo:BFO_0000023 ;
dc:creator "Biocode Commons Ontology Hackathon" ;
obo:IAO_0000115 "A role that is borne by some material entity and is realized by the material entity being the input of an observing process." ;
obo:IAO_0000112 "the role borne by a bird during a Christmas Bird Count"@en ;
obo:IAO_0000114 obo:IAO_0000125 .
### http://purl.org/dc/dcam/VocabularyEncodingScheme
<http://purl.org/dc/dcam/VocabularyEncodingScheme> rdf:type owl:Class ;
rdfs:subClassOf <http://www.geneontology.org/formats/oboInOwl#ObsoleteClass> ;
owl:deprecated "true"^^xsd:boolean ;
obo:IAO_0000231 obo:IAO_0000103 .
### http://purl.org/dc/dcmitype/Event
<http://purl.org/dc/dcmitype/Event> owl:equivalentClass [ rdf:type owl:Class ;
owl:unionOf ( obo:OBI_0000659
obo:bco_0000003
)
] ;
rdfs:subClassOf [ rdf:type owl:Restriction ;
owl:onProperty obo:BFO_0000066 ;
owl:someValuesFrom <http://rs.tdwg.org/dwc/dwctype/Location>
] ;
owl:deprecated "false"^^xsd:boolean ;
obo:IAO_0000114 obo:IAO_0000428 .
### http://rs.tdwg.org/dwc/dwctype/FossilSpecimen
<http://rs.tdwg.org/dwc/dwctype/FossilSpecimen> rdfs:subClassOf <http://rs.tdwg.org/dwc/dwctype/PreservedSpecimen> ;
obo:IAO_0000112 "a fossil housed in a natural history museum"^^xsd:string ;
obo:IAO_0000115 "A preserved specimen that is a fossil."@en ;
obo:BCO_0000060 "fossil specimen"@en ;
obo:IAO_0000114 obo:IAO_0000123 .
[ rdf:type owl:Axiom ;
rdfs:comment "Needs a logical definition."@en ;
owl:annotatedProperty obo:IAO_0000114 ;
owl:annotatedTarget obo:IAO_0000123 ;
owl:annotatedSource <http://rs.tdwg.org/dwc/dwctype/FossilSpecimen>
] .
### http://rs.tdwg.org/dwc/dwctype/HumanObservation
<http://rs.tdwg.org/dwc/dwctype/HumanObservation> rdfs:subClassOf obo:IAO_0000030 ;
obo:IAO_0000112 "a record of an observation in a field notebook"^^xsd:string ,
"a record of the absence of a California Condor at a monitoring site"^^xsd:string ,
"a record of the presence of species of plant in a plot"^^xsd:string ;
obo:IAO_0000115 "The output of a human observation process."@en ;
obo:BCO_0000060 "human observation"@en ;
obo:IAO_0000114 obo:IAO_0000123 .
[ rdf:type owl:Axiom ;
rdfs:comment "Needs a logical definition."@en ;
owl:annotatedProperty obo:IAO_0000114 ;
owl:annotatedTarget obo:IAO_0000123 ;
owl:annotatedSource <http://rs.tdwg.org/dwc/dwctype/HumanObservation>
] .
### http://rs.tdwg.org/dwc/dwctype/LivingSpecimen
<http://rs.tdwg.org/dwc/dwctype/LivingSpecimen> rdfs:subClassOf <http://rs.tdwg.org/dwc/dwctype/MaterialSample> ;
obo:IAO_0000112 "a bacterial culture in a culture collection"^^xsd:string ,
"a germplasm"^^xsd:string ,
"a plant in an arboretum"^^xsd:string ,
"an animal in a zoo"^^xsd:string ;
obo:IAO_0000115 "A specimen that is alive."@en ;
obo:BCO_0000060 "living specimen"@en ;
obo:IAO_0000114 obo:IAO_0000123 .
[ rdf:type owl:Axiom ;
rdfs:comment "Needs a logical definition."@en ;
owl:annotatedProperty obo:IAO_0000114 ;
owl:annotatedTarget obo:IAO_0000123 ;
owl:annotatedSource <http://rs.tdwg.org/dwc/dwctype/LivingSpecimen>
] .
### http://rs.tdwg.org/dwc/dwctype/Location
<http://rs.tdwg.org/dwc/dwctype/Location> obo:IAO_0000424 "The site where a process occurs. In the context of Dawrin Core, this is generally where a specimen is collected, an organism is observed or a measurement is taken."@en ;
obo:BCO_0000060 "location of an event"@en ;
obo:IAO_0000114 obo:IAO_0000123 .
### http://rs.tdwg.org/dwc/dwctype/MachineObservation
<http://rs.tdwg.org/dwc/dwctype/MachineObservation> rdfs:subClassOf obo:IAO_0000030 ;
obo:IAO_0000112 "a record from a camera trap documenting the presence of a jaguar"^^xsd:string ,
"a record from a sensor periodically capturing the surface temperature of a leaf over several hours"^^xsd:string ;
obo:IAO_0000115 "The output of a machine observation process."@en ;
obo:BCO_0000060 "machine observation"@en ;
obo:IAO_0000114 obo:IAO_0000123 .
[ rdf:type owl:Axiom ;
rdfs:comment "Needs a logical definition."@en ;
owl:annotatedProperty obo:IAO_0000114 ;
owl:annotatedTarget obo:IAO_0000123 ;
owl:annotatedSource <http://rs.tdwg.org/dwc/dwctype/MachineObservation>
] .
### http://rs.tdwg.org/dwc/dwctype/MaterialSample
<http://rs.tdwg.org/dwc/dwctype/MaterialSample> obo:IAO_0000112 "a tissue taken from an organism for use in a DNA extraction"^^xsd:string ;
obo:IAO_0000115 "A resource describing the physical results of a sampling (or subsampling) event. In biological collections, the material sample is typically collected, and either preserved or destructively processed."@en ;
obo:BCO_0000060 "material sample"@en ;
obo:IAO_0000114 obo:IAO_0000123 .
### http://rs.tdwg.org/dwc/dwctype/PreservedSpecimen
<http://rs.tdwg.org/dwc/dwctype/PreservedSpecimen> rdfs:subClassOf <http://rs.tdwg.org/dwc/dwctype/MaterialSample> ;
obo:IAO_0000112 "a cleared and stained amphibian in glycerine"^^xsd:string ,
"a dried, pressed plant on a herbarium sheet"^^xsd:string ,
"a fungus mycelium on a glass slide"^^xsd:string ,
"a whole bat carcass in 70% ethanol"^^xsd:string ;
obo:IAO_0000115 "A specimen that has been preserved."@en ;
obo:BCO_0000060 "preserved specimen"@en ;
obo:IAO_0000114 obo:IAO_0000123 .
[ rdf:type owl:Axiom ;
rdfs:comment "Needs a logical definition."@en ;
owl:annotatedProperty obo:IAO_0000114 ;
owl:annotatedTarget obo:IAO_0000123 ;
owl:annotatedSource <http://rs.tdwg.org/dwc/dwctype/PreservedSpecimen>
] .
### http://rs.tdwg.org/dwc/terms/MeasurementOrFact
<http://rs.tdwg.org/dwc/terms/MeasurementOrFact> rdf:type owl:Class ;
rdfs:subClassOf <http://www.geneontology.org/formats/oboInOwl#ObsoleteClass> ;
owl:deprecated "true"^^xsd:boolean ;
obo:IAO_0000231 "This term was not deprecated from the dwc terms vocabulary, merely from the dwcterms ontology, because it is not needed here."@en .
### http://rs.tdwg.org/dwc/terms/ResourceRelationship
<http://rs.tdwg.org/dwc/terms/ResourceRelationship> rdf:type owl:Class ;
rdfs:subClassOf <http://www.geneontology.org/formats/oboInOwl#ObsoleteClass> ;
owl:deprecated "true"^^xsd:boolean ;
obo:IAO_0000231 "This term was not deprecated from the dwc terms vocabulary, merely from the dwcterms ontology, because it is not needed here."@en .
### http://www.geneontology.org/formats/oboInOwl#ObsoleteClass
<http://www.geneontology.org/formats/oboInOwl#ObsoleteClass> rdf:type owl:Class ;
rdfs:label "Obsolete Class"^^xsd:string ;
rdfs:subClassOf owl:Thing .
#################################################################
#
# Individuals
#
#################################################################
### http://purl.obolibrary.org/obo/BCO_0000069
obo:BCO_0000069 rdf:type owl:NamedIndividual ;
rdfs:label "specimen collection process X"@en .
### http://purl.obolibrary.org/obo/BCO_0000070
obo:BCO_0000070 rdf:type owl:NamedIndividual ;
rdfs:label "material entity A"@en ;
obo:OBI_0000295 obo:BCO_0000069 .
### http://purl.obolibrary.org/obo/BCO_0000071
obo:BCO_0000071 rdf:type owl:NamedIndividual ;
rdfs:label "material entity B"@en ;
obo:OBI_0000312 obo:BCO_0000069 ;
obo:OBI_0000295 obo:BCO_0000073 .
### http://purl.obolibrary.org/obo/BCO_0000072
obo:BCO_0000072 rdf:type owl:NamedIndividual ;
rdfs:label "material entity C"@en ;
obo:OBI_0000312 obo:BCO_0000073 .
### http://purl.obolibrary.org/obo/BCO_0000073
obo:BCO_0000073 rdf:type owl:NamedIndividual ;
rdfs:label "specimen collection process Y"@en .
[ obo:IAO_0000231 ""
] .
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#
# Annotations
#
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obo:IAO_0000120 rdfs:label "FossilSpecimen" .
obo:OBI_0000112 obo:IAO_0000118 "material sample"@en .
<http://rs.tdwg.org/dwc/terms/GeologicalContext> obo:IAO_0000114 obo:IAO_0000124 .
<http://rs.tdwg.org/dwc/dwctype/Taxon> obo:IAO_0000114 obo:IAO_0000123 .
<http://rs.tdwg.org/dwc/dwctype/Occurrence> obo:IAO_0000114 obo:IAO_0000123 .
<http://rs.tdwg.org/dwc/terms/Identification> obo:IAO_0000114 obo:IAO_0000125 ;
obo:BCO_0000074 obo:bco_0000042 .
<http://rs.tdwg.org/dwc/terms/attributes/status> rdfs:label "dwc_terms status"@en .
<http://rs.tdwg.org/dwc/dwctype/NomenclaturalChecklist> obo:IAO_0000114 obo:IAO_0000124 .
### Generated by the OWL API (version 3.4.2) http://owlapi.sourceforge.net
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