How to run Enrichr from R

EnrichR.R

# First install R (https://www.r-project.org/) and RStudio(https://rstudio.com/)

# Install enrichR
install.packages("enrichR")

# Load enrichR
library(enrichR)

# Get your gene list, e.g. type by hand
Inflammatory_markers <- c("IL13","MMP12","IL22","NTRK1", "CCL17", "IL36A", "ICOS", "CCL18", "ALOX15", "CCL1", "CCR5", "IL13RA2", "IL19", "CCR7","CCL20", "CCR4","CCR2","CCL11","CCL22","CCR8","CCL19","CCL26","CCL3")

# Or get your gene list, from a CSV
gene_list_csv <- read.csv("my_cool_gene_list.csv")

# Check which database is available and choose your database
listEnrichrDbs()
db <- c("Genome_Browser_PWMs")

# Run your enrichment analysis
enrichr(Inflammatory_markers, db)

Check this website (https://cran.r-project.org/web/packages/enrichR/vignettes/enrichR.html) for more information.
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