-
-
Save varmara/bd3a8d094682a5823cac94221bd8bfe8 to your computer and use it in GitHub Desktop.
This function plots a QQplot as ggplot in R - Parts of the code copied from `car:::qqPlot`
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
gg_qq <- function(x, distribution = "norm", ..., line.estimate = NULL, conf = 0.95, | |
labels = names(x)){ | |
q.function <- eval(parse(text = paste0("q", distribution))) | |
d.function <- eval(parse(text = paste0("d", distribution))) | |
x <- na.omit(x) | |
ord <- order(x) | |
n <- length(x) | |
P <- ppoints(length(x)) | |
df <- data.frame(ord.x = x[ord], z = q.function(P, ...)) | |
if(is.null(line.estimate)){ | |
Q.x <- quantile(df$ord.x, c(0.25, 0.75)) | |
Q.z <- q.function(c(0.25, 0.75), ...) | |
b <- diff(Q.x)/diff(Q.z) | |
coef <- c(Q.x[1] - b * Q.z[1], b) | |
} else { | |
coef <- coef(line.estimate(ord.x ~ z)) | |
} | |
zz <- qnorm(1 - (1 - conf)/2) | |
SE <- (coef[2]/d.function(df$z)) * sqrt(P * (1 - P)/n) | |
fit.value <- coef[1] + coef[2] * df$z | |
df$upper <- fit.value + zz * SE | |
df$lower <- fit.value - zz * SE | |
if(!is.null(labels)){ | |
df$label <- ifelse(df$ord.x > df$upper | df$ord.x < df$lower, labels[ord],"") | |
} | |
p <- ggplot(df, aes(x=z, y=ord.x)) + | |
geom_point() + | |
geom_abline(intercept = coef[1], slope = coef[2]) + | |
geom_ribbon(aes(ymin = lower, ymax = upper), alpha=0.2) | |
if(!is.null(labels)) p <- p + geom_text( aes(label = label)) | |
print(p) | |
coef | |
} |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Animals2 <- data(Animals2, package = "robustbase") | |
mod.lm <- lm(log(Animals2$brain) ~ log(Animals2$body)) | |
x <- rstudent(mod.lm) | |
gg_qq(x) | |
# See http://stackoverflow.com/questions/4357031/qqnorm-and-qqline-in-ggplot2/#27191036 |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment