Cordova config.xml and package.json always updating during restore

config.xml

<?xml version='1.0' encoding='utf-8'?>
<widget id="org.something.something" version="1.0.0" xmlns="http://www.w3.org/ns/widgets" xmlns:gap="http://phonegap.com/ns/1.0">
    <name>This Thing</name>
    <description>
        It's a cool thing (hopefully).
    </description>
    <author>
        Us
    </author>
    <content src="index.html" />
    <preference name="DisallowOverscroll" value="true" />
    <preference name="android-minSdkVersion" value="21" />
    <preference name="orientation" value="portrait" />
    <access origin="*" />
    <allow-intent href="http://*/*" />
    <allow-intent href="https://*/*" />
    <allow-intent href="tel:*" />
    <allow-intent href="sms:*" />
    <allow-intent href="mailto:*" />
    <allow-intent href="geo:*" />
    <platform name="android">
        <allow-intent href="market:*" />
    </platform>
    <platform name="ios">
        <allow-intent href="itms:*" />
        <allow-intent href="itms-apps:*" />
    </platform>
    <engine name="ios" spec="4.5.5" />
    <engine name="android" spec="^7.1.1" />
    <engine name="browser" spec="^5.0.4" />
    <plugin name="cordova-plugin-battery-status" spec="~1.1.1" />
    <plugin name="cordova-plugin-device" spec="~1.1.1" />
    <plugin name="cordova-plugin-device-motion" spec="~1.2.0" />
    <plugin name="cordova-plugin-device-orientation" spec="~1.0.2" />
    <plugin name="cordova-plugin-dialogs" spec="~1.2.0" />
    <plugin name="cordova-plugin-file" spec="~4.1.1" />
    <plugin name="cordova-plugin-globalization" spec="~1.0.3" />
    <plugin name="cordova-plugin-inappbrowser" spec="~1.3.0" />
    <plugin name="cordova-plugin-network-information" spec="~1.2.0" />
    <plugin name="cordova-plugin-statusbar" spec="~2.1.2" />
    <plugin name="cordova-plugin-whitelist" spec="~1.2.1" />
</widget>

package.json

{
  "name": "this-thing",
  "version": "0.1.0",
  "description": "It's a cool thing (hopefully).",
  "private": true,
  "scripts": {
    "test": "echo \"Error: no test specified\" && exit 1",
    "build": "cross-env LOGGY_STACKS=true brunch build",
    "watch": "cross-env LOGGY_STACKS=true brunch watch",
    "start": "cross-env LOGGY_STACKS=true brunch watch --server"
  },
  "author": "Us",
  "license": "UNLICENSED",
  "repository": "",
  "dependencies": {
    "babel-polyfill": "^6.26.0",
    "font-awesome": "^4.7.0",
    "framework7": "^3.3.0",
    "lodash-es": "^4.17.11",
    "cordova-ios": "4.5.5",
    "cordova-android": "^7.1.1",
    "cordova-browser": "^5.0.4",
    "cordova-plugin-battery-status": "~1.1.1",
    "cordova-plugin-device": "~1.1.1",
    "cordova-plugin-device-motion": "~1.2.0",
    "cordova-plugin-device-orientation": "~1.0.2",
    "cordova-plugin-dialogs": "~1.2.0",
    "cordova-plugin-file": "~4.1.1",
    "cordova-plugin-globalization": "~1.0.3",
    "cordova-plugin-inappbrowser": "~1.3.0",
    "cordova-plugin-network-information": "~1.2.0",
    "cordova-plugin-statusbar": "~2.1.2",
    "cordova-plugin-whitelist": "~1.2.1"
  },
  "devDependencies": {
    "autoprefixer": "^8.5.0",
    "babel-brunch": "^6.1.1",
    "babel-cli": "^6.26.0",
    "babel-preset-env": "^1.7.0",
    "brunch": "^2.10.17",
    "clean-css-brunch": "^2.10.0",
    "copycat-brunch": "^1.1.0",
    "cross-env": "^5.1.5",
    "postcss-brunch": "^2.10.1",
    "sass-brunch": "^2.10.7",
    "uglify-js-brunch": "^2.10.0"
  },
  "cordova": {
    "platforms": [
      "ios",
      "android",
      "browser"
    ],
    "plugins": {
      "cordova-plugin-battery-status": {},
      "cordova-plugin-device": {},
      "cordova-plugin-device-motion": {},
      "cordova-plugin-device-orientation": {},
      "cordova-plugin-dialogs": {},
      "cordova-plugin-file": {},
      "cordova-plugin-globalization": {},
      "cordova-plugin-inappbrowser": {},
      "cordova-plugin-network-information": {},
      "cordova-plugin-statusbar": {},
      "cordova-plugin-whitelist": {}
    }
  }
}