wkang0

boto3 quick hands-on

This documentation aims at being a quick-straight-to-the-point-hands-on AWS resources manipulation with [boto3][0].

First of all, you'll need to install [boto3][0]. Installing it along with [awscli][1] is probably a good idea as

• [awscli][1] is boto-based
• [awscli][1] usage is really close to boto's

wkang0

#!/usr/bin/env bash

cd ~
wget https://repo.continuum.io/archive/Anaconda2-4.2.0-Linux-x86_64.sh
bash Anaconda2-4.2.0-Linux-x86_64.sh -b
echo 'PATH="/home/ubuntu/anaconda2/bin:$PATH"' >> .bashrc
. .bashrc

jupyter notebook --generate-config

wkang0

#!/bin/bash

### USAGE
###
### ./ElasticSearch.sh 1.7 will install Elasticsearch 1.7
### ./ElasticSearch.sh will fail because no version was specified (exit code 1)
###
### CLI options Contributed by @janpieper
### Check http://www.elasticsearch.org/download/ for latest version of ElasticSearch

wkang0

cd ~
sudo yum update
sudo yum install java-1.7.0-openjdk.i686 -y

wget https://github.com/downloads/elasticsearch/elasticsearch/elasticsearch-0.19.9.tar.gz -O elasticsearch.tar.gz

tar -xf elasticsearch.tar.gz
rm elasticsearch.tar.gz
mv elasticsearch-* elasticsearch
sudo mv elasticsearch /usr/local/share

wkang0

$("[data-provide='select2']").each(function () {
    var $element = $(this);

    $element.select2({
        placeholder: $element.data("placeholder"),
        minimumInputLength: 0,
        allowClear: true,
        initSelection: function (element, callback) {
            callback({
                id: $(element).val(),

wkang0

"""Tools for searching Pubmed for a list of PMIDs.

The goal here is to search for many PMIDs at once, since searching
sequentially can take a long time. Using the the BioPython Entrez module
is super convenient to this end.

The results results are returned in a simple dictionary format.
"""