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Tweedie distribution in Stan
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data { | |
int N; | |
int M; | |
real<lower=0> Y[N]; | |
} | |
parameters { | |
real<lower=0> mu; | |
real<lower=0> phi; | |
real<lower=1, upper=2> theta; | |
} | |
transformed parameters { | |
real lambda = 1/phi*mu^(2-theta)/(2-theta); | |
real alpha = (2-theta)/(theta-1); | |
real beta = 1/phi*mu^(1-theta)/(theta-1); | |
} | |
model { | |
mu ~ cauchy(0, 5); | |
phi ~ cauchy(0, 5); | |
for (n in 1:N) { | |
if (Y[n] == 0) { | |
target += -lambda; | |
} else { | |
vector[M] ps; | |
for (m in 1:M) | |
ps[m] = poisson_lpmf(m | lambda) + gamma_lpdf(Y[n] | m*alpha, beta); | |
target += log_sum_exp(ps); | |
} | |
} | |
} |
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library(rstan) | |
library(tweedie) | |
stanmodel <- stan_model(file='model/model.stan') | |
N1 <- 200 | |
M1 <- 30 | |
Y1 <- rtweedie(N1, power=1.3, mu=1, phi=1) | |
data1 <- list(N=N1, M=M1, Y=Y1) | |
fit1 <- sampling(stanmodel, data=data1) | |
N2 <- 1000 | |
M2 <- 30 | |
Y2 <- rtweedie(N2, power=1.01, mu=3, phi=1) | |
data2 <- list(N=N2, M=M2, Y=Y2) | |
fit2 <- sampling(stanmodel, data=data2) |
I got it, many thanks.
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First, check the data distribution. Next, look at which of the following figures is similar.
https://cdn-ak.f.st-hatena.com/images/fotolife/S/StatModeling/20201106/20201106201645.png
Then you can see the approximate range of parameters.