John Chilton jmchilton
jmchilton
/ gist:f363cd4642f5cd334a13
Created
June 26, 2014 03:43
— forked from anonymous/gist:7fd4918370efee2e0af6
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| Traceback (most recent call last): | |
| File "/home/galaxy/shed_tools/toolshed.g2.bx.psu.edu/repos/devteam/data_manager_fetch_genome_all_fasta/2ebc856bce29/data_manager_fetch_genome_all_fasta/data_manager/data_manager_fetch_genome_all_fasta.py", line 350, in <module> | |
| if __name__ == "__main__": main() | |
| File "/home/galaxy/shed_tools/toolshed.g2.bx.psu.edu/repos/devteam/data_manager_fetch_genome_all_fasta/2ebc856bce29/data_manager_fetch_genome_all_fasta/data_manager/data_manager_fetch_genome_all_fasta.py", line 345, in main | |
| REFERENCE_SOURCE_TO_DOWNLOAD[ params['param_dict']['reference_source']['reference_source_selector'] ]( data_manager_dict, params, target_directory, dbkey, sequence_id, sequence_name ) | |
| File "/home/galaxy/shed_tools/toolshed.g2.bx.psu.edu/repos/devteam/data_manager_fetch_genome_all_fasta/2ebc856bce29/data_manager_fetch_genome_all_fasta/data_manager/data_manager_fetch_genome_all_fasta.py", line 186, in download_from_ucsc | |
| path_contents = _get_files_in_ftp_path( ftp, ucsc_path ) | |
| File |
jmchilton
/ protvis_mzml.xml
Created
December 18, 2012 22:06
— forked from anonymous/protvis_mzml.xml
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| <display id="protvis_mzml" version="1.0.0" name="display with ProtVis"> | |
| <dynamic_links from_file="tool-data/protk_display_site.txt" skip_startswith="#" id="0" name="0"> | |
| <!-- Define parameters by column from file --> | |
| <dynamic_param name="site_id" value="0"/> | |
| <dynamic_param name="site_url" value="1"/> | |
| <!-- We define url and params as normal, but values defined in dynamic_param are available by specified name --> | |
| <url target_frame="galaxy_main">${site_url}/init_url?url=${mzml_file.qp}&type=mzml${peptide_param.value}${spectrum_param.value}</url> | |
| <param type="data" name="mzml_file" url="galaxy_${DATASET_HASH}.mzml" /> | |
| <param type="template" name="peptide" allow_override="True" /> | |
| <param type="template" name="peptide_param" strip="True"> |